Gene | Cell1 | Cell2 | … | CellN |
---|---|---|---|---|
Gene1 | 0 | 0 | … | 0 |
Gene2 | 5 | 6 | … | 0 |
Gene3 | 4 | 3 | … | 8 |
… | … | … | … | … |
GeneM | 10 | 10 | … | 10 |
Cell | Annot1 | … |
---|---|---|
Cell1 | a | … |
Cell2 | a | … |
Cell3 | b | … |
… | … | … |
CellN | b | … |
Gene | Annot2 | … |
---|---|---|
Gene1 | a | … |
Gene2 | a | … |
Gene3 | b | … |
… | … | … |
GeneM | b | … |
Three approaches of setting provided for flexibility.
Leave unselected for all the others.
Select an analysis and click on "Update All" to show the results.
Plot the top
x
=
genes
Plot the top
x
=
genes
Currently only 'SingleR' method supported.
SingleR works with a reference dataset where the cell type labeling is given. Given a reference dataset of samples (single-cell or bulk) with known labels, it assigns those labels to new cells from a test dataset based on similarities in their expression profiles.
If users want to work with their customized reference dataset, please refer to SCTK's console function: runSingleR()
Plotting tools for data visualization.
Generic heatmap plotting panel for customized figure.
Only to plot cells/features of interests
Stick additional information at sides of the plot
Settings for split, label, dendrogram, color scheme and etc.
Generic bubbleplot plotting panel for customized figure.
Select cluster and features of interests
Settings for title, label, color scheme and etc.