Gene | Cell1 | Cell2 | … | CellN |
---|---|---|---|---|
Gene1 | 0 | 0 | … | 0 |
Gene2 | 5 | 6 | … | 0 |
Gene3 | 4 | 3 | … | 8 |
… | … | … | … | … |
GeneM | 10 | 10 | … | 10 |
Cell | Annot1 | … |
---|---|---|
Cell1 | a | … |
Cell2 | a | … |
Cell3 | b | … |
… | … | … |
CellN | b | … |
Gene | Annot2 | … |
---|---|---|
Gene1 | a | … |
Gene2 | a | … |
Gene3 | b | … |
… | … | … |
GeneM | b | … |
Three approaches of setting provided for flexibility.
Leave unselected for all the others.
Select an analysis and click on "Update All" to show the results.
Plot the top
x
=
genes
Plot the top
x
=
genes
Currently only 'SingleR' method supported.
SingleR works with a reference dataset where the cell type labeling is given. Given a reference dataset of samples (single-cell or bulk) with known labels, it assigns those labels to new cells from a test dataset based on similarities in their expression profiles.
If users want to work with their customized reference dataset, please refer to SCTK's console function: runSingleR()
Plotting tools for data visualization.
Generic heatmap plotting panel for customized figure.
Only to plot cells/features of interests
Stick additional information at sides of the plot
Settings for split, label, dendrogram, color scheme and etc.